TL;DR¶
To use dicom-wsi in a project, you can run in one of two ways. You can run the command line program,
python cli.py -w <WSI File path> -o <OutputDirectory> -p <output file prefix> -y yaml/base.yaml
Or you can run it directly from python
import dicom_wsi
dicom_wsi.dicom_wsi.create_dicom(cfg, pools=n_pools)
The cfg is the dictionary of required entities, and n_pools defines the number of threads to use.
That’s it!