dicom_wsi

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Package for converting whole slide image files to DICOM.

Usage

First, you need to install dicom_wsi and its dependencies. See this link for details.

To use dicom-wsi:

python cli.py cli.py -w <WSI File path> -o <OutputDirectory> -p <output file prefix> -y yaml/base.yaml

That’s it! Most of the time you wan’t need to change anything. But if you do, please see the example yaml file.

Features

  • Validate DICOM elements using pydicom
  • Output format DICOM formatted files (vetted with dciodvfy)

TODO

  • Find out how to determine what FileMetaInformationGroupLength should be

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.