Extracting Annotations & Images from DICOM Files¶
Extract Annotations from DICOM¶
The following script will parse the DICOM file to extract annotations and returns the annotations in a python dictionary object.
$ python dicom_wsi/extract_annotations.py -D <Path to DICOM file>
or from inside a python script:
from dicom_wsi.extract_annotations import extract_ann_dicom
d = extract_ann_dicom('tests/output.6-0.dcm') # Change this to your dicom file
Extract Images from Dicom¶
The following script will parse the DICOM file to extract images and write them to a specified directory.
$ python ./dicom_wsi/extract_image_patches.py -D <Path to Dicom file> -d <Path to output directory>